(#Co-first author, *Co-corresponding author)
1. Xue Ruidong#, Zhang Qiming#, Cao Qi#, Kong Ruirui#, Xiang Xiao#, …, Zhu Jiye*, Zhang Zemin*, Zhang Ning*. Liver tumor immune microenvironment subtypes and neutrophil heterogeneity. Nature 2022; 612(7938): 141-147. “2022 年度中国生物信息学十大进展”
2. Chen Lei#, Zhang Chong#, Xue Ruidong#, …, Steven G Rozen*, Bai Fan*, Wang Hongyang*. Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature 2024.
3. Guo Lin#, …, Xue Ruidong*, Zhang Ning*. Single cell DNA sequencing reveals punctuated and gradual clonal evolution in hepatocellular carcinoma. Gastroenterology 2022;162:238-252. Editorial by Gastroenterology
4. Xiang Xiao#, Liu Ziyang#, Zhang Chong#, Li Zhao#…, Xue Ruidong*, Bai Fan*, Zhu Jiye*. IDH mutation subgroup status associates with intratumor heterogeneity and the tumor microenvironment in intrahepatic cholangiocarcinoma. Advanced Science 2021;8:e2101230.
5. Xue Ruidong#, Chen Lu#, Zhang Chong#, Fujita Masashi#, …, Nakagawa Hidewaki*, Zeng Mu-Sheng*, Bai Fan*, Zhang Ning*. Genomic and transcriptomic profiling of combined hepatocellular and intrahepatic Cholangiocarcinoma Reveals Distinct Molecular Subtypes. Cancer Cell (2019); 35: 932-947 e8. Preview by Cancer Cell, News and Views by Nat Rev G&H,“CellPress 2019中国年度论文”
6. Xue Ruidong#, Li Ruoyan#, Guo Hua#, …, Zhang Zemin, Xie Sunney Xiaoliang, Bai Fan*, Zhang Ning*. Variable intra-tumor genomic heterogeneity of multiple lesions in patients with hepatocellular carcinoma. Gastroenterology (2016); 150: 998-1008. (#Co-first author) Editorial by Gastroenterology
7. Zhang Chong #, Zhang Lin #, Xu Tianlei #, Xue Ruidong #, …, Bai Fan*, Zhang Haizeng*. Mapping the spreading routes of lymphatic metastases in human colorectal cancer. Nature Communications (2020); 11: 1993.
8. Dong Xin, Xue Ruidong. Capture a live-photo of tumor infiltrating T cell landscape at single cell resolution. Cancer Biology & Medicine (2019); 16: 619-622.
9. Xue Ruidong#, Ma Qi#, Baker A. Matthew*, Bai Fan*. A Delicate Nanoscale Motor Made by Nature-The Bacterial Flagellar Motor. Advanced Science (2015); 2: 1500129. (#Co-first author)
10. Xue Ruidong, Li Ruoyan, Bai Fan. Single cell sequencing: technique, application, and future development. Science Bulletin (2015); 60: 33-42.